Publications

  1. F. Schueder°, F. Rievera-Molina, M. Su., Z. Marin, P. Kidd, J. E. Rothman, D. K. Toomre, J. Bewersdorf°                                                                     Unraveling cellular complexity with transient adapters in highly multiplexed super-resolution imaging                                                 Cell (2024), [°Co-corresponding authors]
  2. H. Lian, D Park, M. Chen, F. Schueder, M. Lara-Tejero, J. Liu, J. Galán                                                                                                                                The Parkinson disease kinase LRRK2 coordinates a cell intrinsic defense pathway                                                                                                Nature Microbiology (2023), 1-16
  3. S. Strauss†, A. Borodavka† °, G. Papa, F. Schueder, R. Jungmann°                                                                                                                               Single-cell spatiotemporal transcriptomics of rotavirus captured by DNA-barcoded microscopy                                                               Elife (2023), [†Co-first authors] [°Co-corresponding authors]
  4. F. Schueder†, P. Mangeol†, E. Chan, R. Jungmann°, D. Görlich°, F. Schnorrer°                                                                                                     Nanobodies combined with DNA-PAINT super-resolution reveal a staggered titin nano-architecture in flight muscles                 Elife (2023), [†Co-first authors] [°Co-corresponding authors]
  5. F. Schueder, J. Bewersdorf                                                                                                                                                                                                               Omics goes spatial epigenomics                                                                                                                                                                                 Cell (2022), 23, 4253-4255
  6. M. Fazel, M. J. Wester, D. J. Schodt, S. R. Cruz, S. Strauss, F. Schueder, T. Schlichthaerle, J. M. Gillette, D. S. Lidke, B. Rieger, R. Jungmann, K. A. Lidke High-precision estimation of emitter positions using Bayesian grouping of localizations                                                       Nature Communications (2022), 13, 7152
  7. F.N. Gür†, S. Kempter†, F. Schueder, C. Sikeler, M.J. Urban, R. Jungmann, P.C. Nickels, T. Liedl                                                                                Double- to single-strand transition induces forces and motion in DNA origami structures
    Advanced Materials (2021), 33:37 [†Co-first authors]
  8. T.A.P.M. Huijben, H. Heydarian, A. Auer, F. Schueder, R. Jungmann, S. Stallinga, B. Rieger
    Detecting structural heterogeneity in single-molecule localization microscopy data
    Nature Communications (2021). 12: 3791
  9. M. Lelek, M.T. Gyparaki, G. Beliu, F. Schueder, J. Griffié, S. Manley°, R. Jungmann°, M. Sauer°, M. Lakadamyali°, C. Zimmer°
    Single-molecule localization microscopy
    Nature Reviews Methods Primers     (2021). 1: 39 
  10. H. Heydarian, M. Joosten, A. Przybylski, F. Schueder, R. Jungmann, B. van Werkhoven, J. Keller-Findeisen, J. Ries, S. Stallinga, M. Bates, B. Rieger
    3D particle averaging and detection of macromolecular symmetry in localization microscopy
    Nature Communications (2021). 12: 2847
  11. F. Schueder†, J. Lara-Gutiérrez†, D. Haas, K. Sandvold Beckwith, P. Yin, J. Ellenberg, R. Jungmann
    Super-resolution spatial proximity detection with proximity-PAINT
    Angewandte Chemie (2020), 2, 716-720 [†Co-first authors]
  12. F. Schueder, E. M. Unterauer, M. Ganji, R. Jungmann
    DNA-barcoded fluorescence microscopy for spatial omics
    Proteomics (2020).23, 1900368 1-9
  13. J. M. Brockman†, H. Su†, A. T. Blanchard, Y. Duan, T. Meyer, E. M. Quach, R. Glazier, A. Bazrafshan, R. L. Bender, A. V. Kellner, H. Ogasawara, R. Ma, F. Schueder, B.G. Petrich, R. Jungmann, R. Li, A. L. Mattheyses, Y. Ke, K. Salaita
    Live-cell super-resolved PAINT imaging of pN cellular traction forces
    Nature Methods (2020) 10, 1018-1024 [†Co-first authors]
  14. S.F.J. Wickham, A. Auer, J. Min, N. Ponnuswamy, J.B. Woehrstein, F. Schueder, M. Strauss, J. Schnitzbauer, B. Nathwani, Z. Zhao, S.D. Perrault, J. Hahn, S. Lee, M.M. Bastings, S.W. Helmig, A.L. Kodal, P. Yin, R. Jungmann°, W.M. Shih°
    Complex multicomponent patterns rendered on a 3D DNA-barrel pegboard.
    Nature Communications (2020). 1, 1-10 [°Co-corresponding authors]
  15. J. Cnossen, T. Hinsdale, R.Ø. Thorsen, F. Schueder, R. Jungmann, C.S. Smith°, B. Rieger°, S. Stallinga°
    Localization microscopy at doubled precision with patterned illumination.
    Nature Methods (2020). 17, 59-63 [°Co-corresponding authors]
  16. R. Sasmal, D. Joshi, F. Schueder, R. Jungmann, K. Shafeekh, N. D. Saha, V. G. Preethi, S. Agasti
    Live-Cell Super-Resolution Microscopy via Autonomous Blinking of Dynamic Host-Guest Pairs.
    Chemical Communications (2019). 55, 14430-14433.
  17. F. Schueder, J. Stein, F. Stehr, A. Auer, B. Sperl, M.T. Strauss, P. Schwille, R. Jungmann
    An order of magnitude faster DNA-PAINT imaging by optimized sequence design and buffer conditions.
    Nature Methods (2019). 16, 1101-1104
  18. J. Stein†, F. Stehr†, P. Schueler, P. Blumhardt, F. Schueder, J. Mücksch, R. Jungmann, P. Schwille
    Towards Absolute Molecular Numbers in DNA-PAINT.
    Nano Letters (2019). 19, 8182-8190 [†Co-first authors]
  19. M. Fazel, M.J. Wester, H. Mazloon-Farsibaf, M.B.M. Meddens, A.S. Eklund, T. Schlichthaerle, F. Schueder, R. Jungmann, K.A. Lidke
    Bayesian Multiple Emitter Fitting using Reversible Jump Markov Chain Monte Carlo.
    Scientific Reports (2019). 9, 1-10
  20. T. Schlichthaerle†, M.T. Strauss†, F. Schueder†, A. Auer, B. Nijmeijer, M. Kueblbeck, V. Jimenez Sabinina, J.V. Thevathasan, J. Ries, J. Ellenberg, R. Jungmann
    Direct visualization of single nuclear pore complex proteins using genetically-encoded probes for DNA-PAINT.
    Angewandte Chemie (2019). 58, 1-6. [†Co-first authors]
  21. F. Frottin, F. Schueder, S. Tiwary, R. Gupta, R. Korner, T. Schlichthaerle, J. Cox, R. Jungmann°, F.U. Hartl°, M.S. Hipp°
    The nucleolus functions as a phase-separated protein quality control compartment.
    Science (2019). 365, 342-347. [°Co-corresponding authors]
  22. F. Stehr†, J. Stein†, F. Schueder, P. Schwille°, R. Jungmann°
    Flat-top TIRF illumination boosts DNA-PAINT imaging and quantification.
    Nature Communications (2019). 10, 1268. [†Co-first authors] [°Co-corresponding authors]
  23. O.K. Wade†, J.B. Woehrstein†, P.C. Nickels†, S. Strauss†, F. Stehr, J. Stein, F. Schueder, M.T. Strauss, M. Ganji, J. Schnitzbauer, H. Grabmayr, P. Yin, P. Schwille, R. Jungmann
    124-Color Super-resolution Imaging by Engineering DNA-PAINT Blinking Kinetics.
    Nano Letters (2019). 19, 2641-2646. [†Co-first authors]
  24. N. Krahmer, B. Najafi, F. Schueder, F. Quagliarini, M. Steger, S. Seitz, R. Kasper, F. Salinas, J. Cox, N.H. Uhlenhaut, T.C. Walther, R. Jungmann, A. Zeigerer, G.H.H. Borner, M. Mann
    Organellar Proteomics and Phospho-Proteomics Reveal Subcellular Reorganization in Diet-Induced Hepatic Steatosis.
    Developmental Cell (2018). 47, 205-221 e207.
  25. H. Heydarian, F. Schueder, M.T. Strauss, B. van Werkhoven, M. Fazel, K.A. Lidke, R. Jungmann, S. Stallinga, B. Rieger
    Template-free 2D particle fusion in localization microscopy.
    Nature Methods (2018). 15, 781-784.
  26. A. Auer, T. Schlichthaerle, J.B. Woehrstein, F. Schueder, M.T. Strauss, H. Grabmayr, R. Jungmann
    Nanometer-scale Multiplexed Super-Resolution Imaging with an Economic 3D-DNA-PAINT Microscope.
    Chemphyschem (2018). 19, 3024-3034
  27. T. Schlichthaerle, A. Eklund, F. Schueder, M.T. Strauss, C. Tiede,A. Curd, J. Ries, M. Peckham, D. Tomlinson, R. Jungmann
    Site-specific labeling of Affimers for DNA-PAINT microscopy.
    Angewandte Chemie (2018). 57, 11060-11063
  28. M.T. Strauss†, F. Schueder†, D. Haas†, P. C. Nickels, R. Jungmann
    Assessing accessibility and absolute incorporation efficiency of strands in DNA origami using DNA-PAINT.
    Nature Communications (2018). 9, 1600 [†Co-first authors]
  29. F. Schueder, J. Lara-Gutiérrez, B.J. Beliveau, S.K. Saka, H.M. Sasaki, J.B. Woehrstein, M.T. Strauss, H. Grabmayr, P. Yin°, R. Jungmann°
    Multiplexed 3D super-resolution imaging of whole cells using Spinning Disk Confocal Microscopy and DNA-PAINT.
    Nature Communications (2017). 8, 2090 [°Co-corresponding authors]
  30. L. Ong, N. Hanikel, O. Yaghi, C. Grun, M. Strauss, P. Bron, J. Lai-Kee-Him, F. Schueder, B. Wang, P. Wang, J. Kishi, C. Myhrvold, A. Zhu, R. Jungmann, G. Bellot, Y. Ke, P. Yin
    Programmable self-assembly of three-dimensional nanostructures from 104 unique components.
    Nature (2017). 552, 72-77
  31. J. Schnitzbauer†, M.T. Strauss†, T. Schlichthaerle, F. Schueder, R. Jungmann
    Super-Resolution Microscopy with DNA-PAINT.
    Nature Protocols (2017). 12, 1198-1228 [†Co-first authors]
  32. F. Schueder , M.T. Strauss, D. Hoerl, J. Schnitzbauer, T. Schlichthaerle, S. Strauss, P. Yin, H. Harz, H. Leonhardt, R. Jungmann
    Universal Super-Resolution Multiplexing by DNA Exchange.
    Angewandte Chemie (2017). 56, 4052-4055
  33. S.S. Agasti†, Y. Wang†, F. Schueder, A. Sukumar, R. Jungmann°, P. Yin°
    DNA-barcoded labeling probes for highly multiplexed Exchange-PAINT imaging.
    Chemical Science (2017). 8, 3080-3091 [†Co-first authors] [°Co-corresponding authors]
  34. T. Schlichthaerle, M.T. Strauss, F. Schueder, J.B. Woehrstein, and R. Jungmann
    DNA Nanotechnology and Fluorescence Applications.
    Current Opinion in Biotechnology (2016). 39, 41-47
  35. J.B. Knudsen, L. Liu, A.L.B. Kodal, Q. Li, M. Madsen, J. Song, J.B. Woehrstein, S.F. Wickham, M.T. Strauss, F. Schueder, J. Vinther, A. Krissanaprasit, A.A.A. Smith, R. Ogaki, A.N. Zelikin, F. Besenbacher, P. Yin, W.M. Shih, R. Jungmann, M. Dong°, K.V. Gothelf°
    Routing of individual polymers in designed patterns.
    Nature Nanotechnology (2015). 10, 892-898 [°Co-corresponding authors]
  36. A.A. Deeg, A.M. Reiner, F. Schmidt, F. Schueder, S. Ryazanov, V.C. Ruf, K. Giller, S. Becker, A. Leonov, C. Griesinger, A. Giese, W. Zinth
    Anle138b and related compounds are aggregation specific fluorescence markers and reveal high affinity binding to α-synuclein aggregates.
    Biochim Biophys Acta (2015). 1850, 1884-1890
  37. T. Zhang, A. Neumann, J. Lindlau, Y. Wu, G. Pramanik, B. Naydenov, F. Jelezko, F. Schueder, S. Huber, M. Huber, F. Stehr, A. Högele°, T. Weil°, T. Liedl°
    DNA-Based Self-Assembly of Fluorescent Nanodiamonds.
    JACS (2015). 137, 9776-9779 [°Co-corresponding authors]